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This is a cool idea. I'd like to call attention to a low-cost instrument idea I just posted incase it's a useful detector for you: https://openideo.com/challenge/fighting-ebola/ideas/deploy-low-cost-real-time-pcr-machines-for-rapid-diagnostics

Right now we use blue excitation light but we could easily modify to be UV or IR. How do your quantum dots glow with IR excitation though? They glow further in the IR?